-
recipe
sga
SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
- Homepage
- License
GPL / GPLv3
- Recipe
- Links
biotools: sga
-
package
sga
¶ -
- Versions
0.10.15-5
,0.10.15-4
,0.10.15-3
,0.10.15-2
,0.10.15-1
,0.10.15-0
,0.10.13-0
- Depends
bamtools
>=2.5.1,<2.5.2.0a0
libgcc-ng
>=7.3.0
libstdcxx-ng
>=7.3.0
zlib
>=1.2.11,<1.3.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install sga
and update with:
conda update sga
or use the docker container:
docker pull quay.io/biocontainers/sga:<tag>
(see sga/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/sga/README.html)