recipe sga

SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Homepage

https://github.com/jts/sga

License

GPL / GPLv3

Recipe

/sga/meta.yaml

Links

biotools: sga

package sga

(downloads) docker_sga

Versions

0.10.15-5, 0.10.15-4, 0.10.15-3, 0.10.15-2, 0.10.15-1, 0.10.15-0, 0.10.13-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sga

and update with:

conda update sga

or use the docker container:

docker pull quay.io/biocontainers/sga:<tag>

(see sga/tags for valid values for <tag>)