recipe sga

SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Homepage:

https://github.com/jts/sga

License:

GPL / GPLv3

Recipe:

/sga/meta.yaml

Links:

biotools: sga

package sga

Versions:

0.10.15-7,  0.10.15-6,  0.10.15-5,  0.10.15-4,  0.10.15-3,  0.10.15-2,  0.10.15-1,  0.10.15-0,  0.10.13-0

Depends:

• bamtools >=2.5.1,<2.5.2.0a0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• sparsehash

• zlib >=1.2.11,<1.3.0a0

Required By:

• matam

• sga_ice

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install sga

and update with:

conda update sga

or use the docker container:

docker pull quay.io/biocontainers/sga:<tag>

(see sga/tags for valid values for <tag>)

Download stats

Link to this page

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