recipe sga

SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Homepage

https://github.com/jts/sga

License

GPL / GPLv3

Recipe

/sga/meta.yaml

Links

biotools: sga

package sga

Versions

0.10.15-5,  0.10.15-4,  0.10.15-3,  0.10.15-2,  0.10.15-1,  0.10.15-0,  0.10.13-0

Depends

• bamtools >=2.5.1,<2.5.2.0a0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• sparsehash

• zlib >=1.2.11,<1.3.0a0

Required By

• matam

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sga

and update with:

conda update sga

or use the docker container:

docker pull quay.io/biocontainers/sga:<tag>

(see sga/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sga/README.html)