recipe sgcocaller

Personalized haplotype construction and crossover calling in single-cell DNA sequenced gamete cells.

Homepage:

https://gitlab.svi.edu.au/biocellgen-public/sgcocaller

License:

MIT

Recipe:

/sgcocaller/meta.yaml

Links:

biotools: sgcocaller

package sgcocaller

versions:

0.3.9-2,  0.3.9-1,  0.3.9-0,  0.3.7-2,  0.3.7-1,  0.3.7-0,  0.3.6-1,  0.3.6-0,  0.3.5-0, 

0.3.9-2,  0.3.9-1,  0.3.9-0,  0.3.7-2,  0.3.7-1,  0.3.7-0,  0.3.6-1,  0.3.6-0,  0.3.5-0,  0.3.4-0

depends _openmp_mutex:

>=4.5

depends bzip2:

>=1.0.8,<2.0a0

depends htslib:

>=1.17,<1.22.0a0

depends libgcc-ng:

>=12

depends libgfortran-ng:

depends libgfortran5:

>=10.4.0

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends pcre:

>=8.45,<9.0a0

depends zlib:

>=1.2.13,<1.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install sgcocaller

and update with::

   mamba update sgcocaller

To create a new environment, run:

mamba create --name myenvname sgcocaller

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/sgcocaller:<tag>

(see `sgcocaller/tags`_ for valid values for ``<tag>``)

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