recipe siann

SIANN was created to allow creation of local small sets of bacterial/viral genomes to perform strain level differentiation from fastq data

Homepage:

https://github.com/signaturescience/siann/wiki

License:

GPL3

Recipe:

/siann/meta.yaml

package siann

versions:

1.3-0,  1.2-1,  1.2-0,  1.1-0,  1.0-0

depends bowtie2:

depends mummer:

depends parallel:

depends python:

2.*

depends scipy:

depends time:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install siann

and update with::

   mamba update siann

To create a new environment, run:

mamba create --name myenvname siann

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/siann:<tag>

(see `siann/tags`_ for valid values for ``<tag>``)

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