recipe smcounter2

smCounter2: an accurate low-frequency variant caller for targeted sequencing data with unique molecular identifiers

Homepage:

https://github.com/qiaseq/qiaseq-smcounter-v2

License:

MIT

Recipe:

/smcounter2/meta.yaml

package smcounter2

Versions:

0.1.2018.08.28-2,  0.1.2018.08.28-1,  0.1.2018.08.28-0

Depends:

• bedtools

• openpyxl

• pysam

• python <3

• r-base

• r-plyr

• scipy

• statistics

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install smcounter2

and update with:

conda update smcounter2

or use the docker container:

docker pull quay.io/biocontainers/smcounter2:<tag>

(see smcounter2/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/smcounter2/README.html)