recipe smoove

structural variant calling and genotyping with existing tools, but, smoothly

Homepage:https://github.com/brentp/smoove License:Apache / Apache-2.0 Recipe:/smoove/meta.yaml

package smoove

Versions:

0.2.3-1, 0.2.3-0, 0.1.9-0, 0.1.6-0, 0.1.5-0, 0.1.4-0, 0.1.3-0, 0.1.1-0

Depends:

• bcftools
• duphold
• gsort
• htslib
• lumpy-sv
• mosdepth
• samtools
• svtools
• svtyper

Required By:

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install smoove

and update with:

conda update smoove

or use the docker container:

docker pull quay.io/biocontainers/smoove:<tag>

(see smoove/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/smoove/README.html)