recipe snakemake

A popular workflow management system aiming at full in-silico reproducibility.

Homepage:

https://snakemake.github.io

License:

MIT

Recipe:

/snakemake/meta.yaml

Links:

doi: 10.1093/bioinformatics/bts480, biotools: Snakemake

Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in python style. Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files.

package snakemake

(downloads) docker_snakemake

Versions:
7.26.0-07.25.4-07.25.3-07.25.2-07.25.1-07.25.0-17.25.0-07.24.2-07.24.0-1

7.26.0-07.25.4-07.25.3-07.25.2-07.25.1-07.25.0-17.25.0-07.24.2-07.24.0-17.24.0-07.22.0-07.21.0-07.20.0-07.19.1-07.19.0-07.18.2-17.18.2-07.18.1-07.18.0-07.17.1-07.17.0-07.16.0-07.15.2-07.15.1-07.14.2-07.14.1-07.14.0-07.12.1-07.12.0-07.11.0-07.9.0-07.8.5-07.8.3-07.8.2-07.8.1-07.8.0-07.7.0-07.6.2-07.6.1-17.6.1-07.6.0-07.5.0-07.3.8-07.3.7-07.3.6-07.3.5-07.3.4-07.3.3-07.3.2-07.3.1-17.3.1-07.3.0-07.2.1-07.1.1-07.1.0-07.0.4-07.0.3-07.0.2-07.0.1-17.0.1-07.0.0-06.15.5-06.15.3-06.15.2-06.15.1-06.15.0-06.14.0-06.13.1-06.13.0-06.12.3-06.12.2-06.12.1-06.12.0-06.11.1-06.11.0-06.10.0-06.9.1-06.9.0-06.8.2-06.8.1-06.8.0-06.7.0-06.6.1-06.6.0-06.5.3-06.5.2-06.5.1-06.5.0-06.4.1-06.4.0-06.3.0-06.2.1-06.2.0-06.1.2-16.1.2-06.1.1-06.1.0-16.1.0-06.0.5-16.0.5-06.0.3-06.0.2-06.0.1-06.0.0-05.32.2-05.32.1-05.32.0-05.31.1-15.31.1-05.31.0-05.30.2-05.30.1-05.29.0-05.28.0-05.27.4-05.26.1-15.26.1-05.26.0-05.25.0-15.25.0-05.24.2-05.24.1-05.24.0-15.24.0-05.23.0-25.23.0-15.23.0-05.22.1-05.22.0-05.21.0-05.20.1-15.20.1-05.20.0-05.19.3-05.19.2-05.19.1-05.19.0-05.18.1-05.18.0-05.17.0-05.16.0-05.15.0-05.14.0-15.14.0-05.13.0-05.12.3-05.12.2-05.12.1-05.11.2-05.11.1-05.11.0-05.10.0-05.9.1-05.8.2-05.8.1-05.7.4-05.7.1-05.7.0-05.6.0-05.5.4-25.5.4-15.5.4-05.5.3-05.5.2-05.5.1-05.5.0-05.4.5-05.4.4-05.4.3-05.4.2-05.4.1-05.4.0-05.3.1-05.3.0-25.3.0-15.2.4-15.2.2-15.2.1-05.2.0-05.1.5-05.1.4-25.1.4-05.1.3-05.1.2-05.1.1-05.0.0-04.8.1-04.8.0-04.7.0-04.6.0-04.5.1-04.5.0-04.4.0-04.3.1-04.3.0-04.2.0-04.1.0-04.0.0-14.0.0-03.13.3-03.13.2-03.13.0-13.12.0-13.11.2-13.11.2-03.11.1-13.11.1-03.11.0-13.10.2-13.10.1-13.10.1-03.10.0-03.9.1-03.9.0-03.8.2-03.8.1-03.8.0-03.7.1-03.7.0-03.6.1-03.6.0-03.5.5-13.5.4-13.5.3-13.5.2-13.5.1-13.4.2-1

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install snakemake

and update with:

conda update snakemake

or use the docker container:

docker pull quay.io/biocontainers/snakemake:<tag>

(see snakemake/tags for valid values for <tag>)

package snakemake-minimal

(downloads) docker_snakemake-minimal

Versions:
7.26.0-07.25.4-07.25.3-07.25.2-07.25.1-07.25.0-17.25.0-07.24.2-07.24.0-1

7.26.0-07.25.4-07.25.3-07.25.2-07.25.1-07.25.0-17.25.0-07.24.2-07.24.0-17.24.0-07.22.0-07.21.0-07.20.0-07.19.1-07.19.0-07.18.2-17.18.2-07.18.1-07.18.0-07.17.1-07.17.0-07.16.0-07.15.2-07.15.1-07.14.2-07.14.1-07.14.0-07.12.1-07.12.0-07.11.0-07.9.0-07.8.5-07.8.3-07.8.2-07.8.1-07.8.0-07.7.0-07.6.2-07.6.1-17.6.1-07.6.0-07.5.0-07.3.8-07.3.7-07.3.6-07.3.5-07.3.4-07.3.3-07.3.2-07.3.1-17.3.1-07.3.0-07.2.1-07.1.1-07.1.0-07.0.4-07.0.3-07.0.2-07.0.1-17.0.1-07.0.0-06.15.5-06.15.3-06.15.2-06.15.1-06.15.0-06.14.0-06.13.1-06.13.0-06.12.3-06.12.2-06.12.1-06.12.0-06.11.1-06.11.0-06.10.0-06.9.1-06.9.0-06.8.2-06.8.1-06.8.0-06.7.0-06.6.1-06.6.0-06.5.3-06.5.2-06.5.1-06.5.0-06.4.1-06.4.0-06.3.0-06.2.1-06.2.0-06.1.2-16.1.2-06.1.1-06.1.0-16.1.0-06.0.5-16.0.5-06.0.3-06.0.2-06.0.1-06.0.0-05.32.2-05.32.1-05.32.0-05.31.1-15.31.1-05.31.0-05.30.2-05.30.1-05.29.0-05.28.0-05.27.4-05.26.1-15.26.1-05.26.0-05.25.0-15.25.0-05.24.2-05.24.1-05.24.0-15.24.0-05.23.0-25.22.1-05.22.0-05.21.0-05.20.1-15.20.1-05.20.0-05.19.3-05.19.2-05.19.1-05.19.0-05.18.1-05.18.0-05.17.0-05.16.0-05.15.0-05.14.0-15.14.0-05.13.0-05.12.3-05.12.2-05.12.1-05.11.2-05.11.1-05.11.0-05.10.0-05.9.1-05.8.2-05.8.1-05.7.4-05.7.1-05.7.0-05.6.0-05.5.4-25.5.4-15.5.4-05.5.3-05.5.2-05.5.1-05.5.0-05.4.5-05.4.4-15.4.3-15.4.3-05.4.2-15.4.2-05.4.1-05.4.0-05.3.1-05.3.0-25.3.0-15.3.0-05.2.4-05.2.2-15.2.2-05.2.1-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install snakemake-minimal

and update with:

conda update snakemake-minimal

or use the docker container:

docker pull quay.io/biocontainers/snakemake-minimal:<tag>

(see snakemake-minimal/tags for valid values for <tag>)

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