recipe snp-pileup

Compute SNP pileup at reference positions in one or more input bam files. Output is ready for the R package facets

Homepage

https://github.com/mskcc/facets

License

MIT / MIT

Recipe

/snp-pileup/meta.yaml

package snp-pileup

(downloads) docker_snp-pileup

Versions

0.6.1-10.6.1-00.5.14-30.5.14-20.5.14-10.5.14-0v0.5.14-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install snp-pileup

and update with:

conda update snp-pileup

or use the docker container:

docker pull quay.io/biocontainers/snp-pileup:<tag>

(see snp-pileup/tags for valid values for <tag>)