recipe snpeff

Genetic variant annotation and effect prediction toolbox

Homepage

http://snpeff.sourceforge.net/

License

LGPLv3

Recipe

/snpeff/meta.yaml

Links

biotools: snpeff

package snpeff

(downloads) docker_snpeff

Versions
5.0-15.0-04.5covid19-24.5covid19-14.5covid19-04.3.1t-54.3.1t-44.3.1t-34.3.1t-2

5.0-15.0-04.5covid19-24.5covid19-14.5covid19-04.3.1t-54.3.1t-44.3.1t-34.3.1t-24.3.1t-14.3.1t-04.3.1r-04.3.1q-04.3.1p-14.3.1p-04.3.1o-04.3.1m-04.3.1k-04.3-34.3-24.3-14.3-04.3k-04.3i-04.3g-04.3b-04.2-04.1l-84.1l-74.1l-64.1l-54.1l-44.1l-34.1l-24.1l-14.1l-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install snpeff

and update with:

conda update snpeff

or use the docker container:

docker pull quay.io/biocontainers/snpeff:<tag>

(see snpeff/tags for valid values for <tag>)

Notes

The tool is available as command `snpEff`. Note that the package version is slightly different from upstream, this is to make sure conda will order the package versions correctly.

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