- recipe soapdenovo2
SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes.
- package soapdenovo2¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install soapdenovo2 and update with:: mamba update soapdenovo2
To create a new environment, run:
mamba create --name myenvname soapdenovo2
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/soapdenovo2:<tag> (see `soapdenovo2/tags`_ for valid values for ``<tag>``)