recipe spades

SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies.

Homepage

http://cab.spbu.ru/software/spades/

Documentation

http://cab.spbu.ru/files/release3.13.1/manual.html

Developer docs

https://github.com/ablab/spades

License

GPL / GPLv2

Recipe

/spades/meta.yaml

Links

biotools: Spades, doi: 10.1089/cmb.2012.0021, doi: 10.1101/gr.213959.116

package spades

(downloads) docker_spades

Versions

3.13.1-0, 3.13.0-0, 3.12.0-1, 3.12.0-0, 3.11.1-3, 3.11.1-2, 3.11.1-1, 3.11.1-0, 3.11.0-1, 3.11.0-0, 3.10.1-0, 3.10.0-0, 3.9.0-2, 3.9.0-1, 3.9.0-0, 3.8.1-0, 3.8.0-0, 3.7.0-0, 3.6.2-0, 3.5.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install spades

and update with:

conda update spades

or use the docker container:

docker pull quay.io/biocontainers/spades:<tag>

(see spades/tags for valid values for <tag>)