recipe sprai

Sprai (single-pass read accuracy improver) is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads; instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.

Homepage

http://zombie.cb.k.u-tokyo.ac.jp/sprai/

License

MIT License

Recipe

/sprai/meta.yaml

package sprai

(downloads) docker_sprai

Versions

0.9.9.23-0

Depends blast

Depends libgcc

Depends perl

5.22.0*

Depends perl-app-cpanminus

Depends perl-module-build

Depends python

2.7*

Depends wgs-assembler

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sprai

and update with:

conda update sprai

or use the docker container:

docker pull quay.io/biocontainers/sprai:<tag>

(see sprai/tags for valid values for <tag>)