sprai

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Sprai (single-pass read accuracy improver) is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads; instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.

Home http://zombie.cb.k.u-tokyo.ac.jp/sprai/
Versions 0.9.9.23
License MIT License
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/sprai

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install sprai

and update with:

conda update sprai

docker

A Docker container is available at https://quay.io/repository/biocontainers/sprai.