- recipe sra-tools
SRA Toolkit and SDK from NCBI
- Homepage:
- License:
Public Domain
- Recipe:
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
- package sra-tools¶
-
- Versions:
3.0.5-1
,3.0.5-0
,3.0.3-0
,3.0.0-1
,3.0.0-0
,2.11.0-3
,2.11.0-2
,2.11.0-1
,2.11.0-0
,3.0.5-1
,3.0.5-0
,3.0.3-0
,3.0.0-1
,3.0.0-0
,2.11.0-3
,2.11.0-2
,2.11.0-1
,2.11.0-0
,2.10.9-0
,2.10.8-0
,2.10.7-2
,2.10.7-1
,2.10.7-0
,2.10.3-0
,2.10.1-0
,2.10.0-0
,2.9.6-0
,2.9.1_1-0
,2.9.1-0
,2.9.0-1
,2.8.2-1
,2.8.2-0
,2.8.1-0
,2.8.0-0
,2.7.0-0
,2.6.3-0
,2.6.2-0
- Depends:
libgcc-ng
>=12
libstdcxx-ng
>=12
ncbi-vdb
>=3.0.5
perl-uri
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install sra-tools
and update with:
conda update sra-tools
or use the docker container:
docker pull quay.io/biocontainers/sra-tools:<tag>
(see sra-tools/tags for valid values for
<tag>
)
Notes¶
After installation, you should run the configuration tool: ./vdb-config -i. This tool will setup your download/cache area for downloaded files and references.
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/sra-tools/README.html)