recipe sra-tools

SRA Toolkit and SDK from NCBI

Homepage:

https://github.com/ncbi/sra-tools

License:

Public Domain

Recipe:

/sra-tools/meta.yaml

The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

package sra-tools

(downloads) docker_sra-tools

Versions:
3.0.5-13.0.5-03.0.3-03.0.0-13.0.0-02.11.0-32.11.0-22.11.0-12.11.0-0

3.0.5-13.0.5-03.0.3-03.0.0-13.0.0-02.11.0-32.11.0-22.11.0-12.11.0-02.10.9-02.10.8-02.10.7-22.10.7-12.10.7-02.10.3-02.10.1-02.10.0-02.9.6-02.9.1_1-02.9.1-02.9.0-12.8.2-12.8.2-02.8.1-02.8.0-02.7.0-02.6.3-02.6.2-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install sra-tools

and update with:

conda update sra-tools

or use the docker container:

docker pull quay.io/biocontainers/sra-tools:<tag>

(see sra-tools/tags for valid values for <tag>)

Notes

After installation, you should run the configuration tool: ./vdb-config -i. This tool will setup your download/cache area for downloaded files and references.

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