recipe srnaminer

sRNAminer: a Multifunctional Toolkit for Next Generation Sequencing Small RNA Data Mining

Homepage:

https://github.com/kli28/sRNAminer

License:

CC BY-NC-SA 4.0

Recipe:

/srnaminer/meta.yaml

sRNAminer-A multifunctional toolkit for sRNA analysis.

package srnaminer

versions:

1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.9-0,  1.0.8-0,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.4-0, 

1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.9-0,  1.0.8-0,  1.0.7-0,  1.0.6-0,  1.0.5-0,  1.0.4-0,  1.0.3-0

depends biopython:

depends blast:

depends bowtie:

depends fasta3:

depends numpy:

depends openjdk:

depends pandas:

depends parallel:

depends python:

>=3

depends samtools:

depends viennarna:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install srnaminer

and update with::

   mamba update srnaminer

To create a new environment, run:

mamba create --name myenvname srnaminer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/srnaminer:<tag>

(see `srnaminer/tags`_ for valid values for ``<tag>``)

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