recipe srst2

Short Read Sequence Typing for Bacterial Pathogens

Homepage

https://github.com/katholt/srst2

License

BSD

Recipe

/srst2/meta.yaml

package srst2

(downloads) docker_srst2

Versions

0.2.0-3, 0.2.0-2, 0.2.0-1, 0.2.0-0, 0.1.6-1, 0.1.6-0, 0.1.4.6-1, 0.1.4.6-0

Depends bowtie2

<=2.2.9

Depends numpy

>=1.7.1

Depends python

>=2.7,<2.8.0a0

Depends samtools

0.1.18

Depends scipy

>=0.12.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install srst2

and update with:

conda update srst2

or use the docker container:

docker pull quay.io/biocontainers/srst2:<tag>

(see srst2/tags for valid values for <tag>)