Package Recipe 'srst2'

recipe srst2

Short Read Sequence Typing for Bacterial Pathogens

Homepage:: https://github.com/katholt/srst2
License:: BSD
Recipe:: /srst2/meta.yaml

package srst2¶

Versions:

0.2.0-4, 0.2.0-3, 0.2.0-2, 0.2.0-1, 0.2.0-0, 0.1.6-1, 0.1.6-0, 0.1.4.6-1, 0.1.4.6-0

Depends:

bowtie2 <=2.2.9
numpy >=1.7.1
python <3
samtools 0.1.18
scipy >=0.12.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install srst2

and update with:

conda update srst2

or use the docker container:

docker pull quay.io/biocontainers/srst2:<tag>

(see srst2/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/srst2/README.html)