recipe strainest

Abundance estimation of strains

Homepage

https://github.com/compmetagen/strainest

License

GPL / GPL-3.0

Recipe

/strainest/meta.yaml

package strainest

(downloads) docker_strainest

Versions

1.2.4-3, 1.2.4-2, 1.2.4-0, 1.2.2-0

Depends biopython

>=1.50

Depends click

>=5.1

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends matplotlib

>=1.3.0

Depends mummer

3.23.*

Depends numpy

>=1.7.0

Depends pandas

Depends pysam

>=0.9

Depends python

>=2.7,<2.8.0a0

Depends scikit-learn

>=0.16.1

Depends scipy

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install strainest

and update with:

conda update strainest

or use the docker container:

docker pull quay.io/biocontainers/strainest:<tag>

(see strainest/tags for valid values for <tag>)