recipe stream

STREAM-Single-cell Trajectories Reconstruction, Exploration And Mapping

Homepage:

https://github.com/pinellolab/STREAM

License:

AGPL-3

Recipe:

/stream/meta.yaml

package stream

versions:

1.1-0,  1.0-0,  0.4.1-0,  0.4.0-0,  0.3.9-3,  0.3.9-2,  0.3.9-1,  0.3.9-0,  0.3.8-0, 

1.1-0,  1.0-0,  0.4.1-0,  0.4.0-0,  0.3.9-3,  0.3.9-2,  0.3.9-1,  0.3.9-0,  0.3.8-0,  0.3.7-1,  0.3.7-0,  0.3.6-1,  0.3.5-0,  0.3.4-0,  0.3.3-0,  0.3.2-2,  0.3.2-1,  0.3.2-0,  0.3.1-2,  0.3.1-1,  0.3.1-0,  0.3.0-0,  0.2.6-0,  0.2.5-0,  0.2.4-0,  0.2.3-0,  0.2.2-0,  0.2.1-0,  0.2.0-0

depends anndata:

depends gunicorn:

depends matplotlib-base:

>=3.2

depends networkx:

2.1.*

depends numpy:

depends plotly:

depends python:

>=3

depends python-slugify:

depends r-base:

3.6.*

depends r-devtools:

depends r-distutils:

depends r-elpigraph.r:

depends r-essentials:

depends r-igraph:

depends r-kernsmooth:

depends r-rcpp:

depends r-rcpparmadillo:

depends r-vgam:

depends r-xml:

depends rpy2:

2.9.*

depends scikit-learn:

>=0.23

depends scipy:

depends seaborn:

depends shapely:

depends statsmodels:

depends umap-learn:

depends unzip:

depends zip:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install stream

and update with::

   mamba update stream

To create a new environment, run:

mamba create --name myenvname stream

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/stream:<tag>

(see `stream/tags`_ for valid values for ``<tag>``)

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