stringmlst

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Fast k-mer based tool for multi locus sequence typing (MLST) directly from genome sequencing reads

Home https://github.com/jordanlab/stringMLST
Versions 0.3.6.1, 0.3.7, 0.4, 0.4.1, 0.4.2
License CC BY-NC-SA 4.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/stringmlst

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install stringmlst

and update with:

conda update stringmlst

docker

A Docker container is available at https://quay.io/repository/biocontainers/stringmlst.