recipe stringmlst

Fast k-mer based tool for multi locus sequence typing (MLST) directly from genome sequencing reads

Homepage:

https://github.com/jordanlab/stringMLST

License:

CC BY-NC-SA 4.0

Recipe:

/stringmlst/meta.yaml

package stringmlst

Versions:

0.6.3-0,  0.6.2-1,  0.6.2-0,  0.6.1-0,  0.5.1-0,  0.5.1a-1,  0.5.1a-0,  0.4.2-0,  0.4.1-0, 

0.6.3-0,  0.6.2-1,  0.6.2-0,  0.6.1-0,  0.5.1-0,  0.5.1a-1,  0.5.1a-0,  0.4.2-0,  0.4.1-0,  0.4-0,  0.3.7-0,  0.3.6.1-0

Depends:

• bedtools

• bwa

• lxml

• pyfaidx

• python >=3

• samtools >=1.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install stringmlst

and update with:

conda update stringmlst

or use the docker container:

docker pull quay.io/biocontainers/stringmlst:<tag>

(see stringmlst/tags for valid values for <tag>)

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Link to this page

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