- recipe stringtie
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.
- Homepage:
- Developer docs:
- License:
MIT / MIT
- Recipe:
- Links:
biotools: StringTie, usegalaxy-eu: stringtie, doi: 10.1038/nbt.3122, doi: 10.1038/nprot.2016.095, doi: 10.1186/s13059-019-1910-1
- package stringtie¶
-
- Versions:
2.2.1-4
,2.2.1-3
,2.2.1-2
,2.2.1-1
,2.2.1-0
,2.2.0-1
,2.2.0-0
,2.1.7-0
,2.1.6-0
,2.2.1-4
,2.2.1-3
,2.2.1-2
,2.2.1-1
,2.2.1-0
,2.2.0-1
,2.2.0-0
,2.1.7-0
,2.1.6-0
,2.1.5-1
,2.1.5-0
,2.1.4-0
,2.1.2-1
,2.1.2-0
,2.1.1-0
,2.0-0
,1.3.6-0
,1.3.5-0
,1.3.4-1
,1.3.4-0
,1.3.3-4
,1.3.3-3
,1.3.3-2
,1.3.3b-1
,1.3.3b-0
,1.3.0-2
,1.3.0-1
,1.3.0-0
,1.2.4-2
,1.2.4-1
,1.2.4-0
,1.2.3-0
,1.2.2-2
,1.2.2-1
,1.2.0-1
,1.2.0-0
,1.1.2-0
,1.1.1-0
,1.1.0-0
,1.0.4-1
,1.0.4-0
,1.0.3-1
,1.0.3-0
,1.0.1-0
,0.97-0
- Depends:
htslib
>=1.17,<1.18.0a0
libgcc-ng
>=12
libstdcxx-ng
>=12
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install stringtie
and update with:
conda update stringtie
or use the docker container:
docker pull quay.io/biocontainers/stringtie:<tag>
(see stringtie/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/stringtie/README.html)