recipe stringtie

StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.

Homepage

https://ccb.jhu.edu/software/stringtie/

Developer docs

https://github.com/gpertea/stringtie

License

MIT / MIT

Recipe

/stringtie/meta.yaml

Links

biotools: StringTie, doi: 10.1038/nbt.3122, doi: 10.1038/nprot.2016.095, doi: 10.1186/s13059-019-1910-1

package stringtie

Versions

2.1.2-1,  2.1.2-0,  2.1.1-0,  2.0-0,  1.3.6-0,  1.3.5-0,  1.3.4-1,  1.3.4-0,  1.3.3-4, 

2.1.2-1,  2.1.2-0,  2.1.1-0,  2.0-0,  1.3.6-0,  1.3.5-0,  1.3.4-1,  1.3.4-0,  1.3.3-4,  1.3.3-3,  1.3.3-2,  1.3.3b-0,  1.3.0-2,  1.3.0-1,  1.3.0-0,  1.2.4-2,  1.2.4-1,  1.2.4-0,  1.2.3-0,  1.2.2-2,  1.2.2-1,  1.2.0-1,  1.2.0-0,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.4-1,  1.0.4-0,  1.0.3-1,  1.0.3-0,  1.0.1-0,  0.97-0

Depends

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• python

Required By

• funannotate

• piret

• imfusion

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install stringtie

and update with:

conda update stringtie

or use the docker container:

docker pull quay.io/biocontainers/stringtie:<tag>

(see stringtie/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/stringtie/README.html)