recipe stringtie

StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.

Homepage

https://ccb.jhu.edu/software/stringtie/

Developer docs

https://github.com/gpertea/stringtie

License

MIT / MIT

Recipe

/stringtie/meta.yaml

Links

biotools: StringTie, doi: 10.1038/nbt.3122, doi: 10.1038/nprot.2016.095, doi: 10.1186/s13059-019-1910-1

package stringtie

Versions

2.1.2-0, 2.1.1-0, 2.0-0, 1.3.6-0, 1.3.5-0, 1.3.4-1, 1.3.4-0, 1.3.3-4, 1.3.3-3, 1.3.3-2, 1.3.3b-0, 1.3.0-2, 1.3.0-1, 1.3.0-0, 1.2.4-2, 1.2.4-1, 1.2.4-0, 1.2.3-0, 1.2.2-2, 1.2.2-1, 1.2.0-1, 1.2.0-0, 1.1.2-0, 1.1.1-0, 1.1.0-0, 1.0.4-1, 1.0.4-0, 1.0.3-1, 1.0.3-0, 1.0.1-0, 0.97-0

Depends

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• python

Required By

• piret

• imfusion

• funannotate

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install stringtie

and update with:

conda update stringtie

or use the docker container:

docker pull quay.io/biocontainers/stringtie:<tag>

(see stringtie/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/stringtie/README.html)