recipe super-focus

SUPER-FOCUS: A tool for agile functional analysis of shotgun metagenomic data

Homepage:

https://edwards.sdsu.edu/SUPERFOCUS

Developer docs:

https://github.com/metageni/SUPER-FOCUS

License:

GPL / GPL-3.0

Recipe:

/super-focus/meta.yaml

package super-focus

versions:

1.6-1,  1.6-0,  1.5-0,  1.4.1-0,  1.4-0,  1.0-0,  0.35-0,  0.34-1,  0.34-0, 

1.6-1,  1.6-0,  1.5-0,  1.4.1-0,  1.4-0,  1.0-0,  0.35-0,  0.34-1,  0.34-0,  0.33-0,  0.32-1,  0.32-0,  0.31-0,  0.30-0,  0.29-0

depends blast:

depends diamond:

depends kmer-jellyfish:

depends mmseqs2:

depends numpy:

>=1.12.1

depends python:

>=3

depends rapsearch:

depends scipy:

depends setuptools:

depends setuptools_scm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install super-focus

and update with::

   mamba update super-focus

To create a new environment, run:

mamba create --name myenvname super-focus

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/super-focus:<tag>

(see `super-focus/tags`_ for valid values for ``<tag>``)

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Link to this page

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