recipe swarm

A robust and fast clustering method for amplicon-based studies.

Homepage:

https://github.com/torognes/swarm

License:

GPL / Affero GPL

Recipe:

/swarm/meta.yaml

Links:

biotools: swarm, doi: 10.7717/peerj.593

package swarm

versions:

3.1.5-2,  3.1.5-1,  3.1.5-0,  3.1.4-0,  3.1.3-2,  3.1.3-1,  3.1.3-0,  3.1.2-0,  3.1.1-0, 

3.1.5-2,  3.1.5-1,  3.1.5-0,  3.1.4-0,  3.1.3-2,  3.1.3-1,  3.1.3-0,  3.1.2-0,  3.1.1-0,  3.1.0-2,  3.1.0-1,  3.1.0-0,  3.0.0-0,  2.2.2-2,  2.2.2-1,  2.2.2-0,  2.1.13-0,  2.1.10-0,  2.1.5-0,  1.2.19-1,  1.2.19-0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends python:

>=3

depends python-igraph:

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install swarm

and update with::

   mamba update swarm

To create a new environment, run:

mamba create --name myenvname swarm

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/swarm:<tag>

(see `swarm/tags`_ for valid values for ``<tag>``)

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