recipe swarm

A robust and fast clustering method for amplicon-based studies.

Homepage

https://github.com/torognes/swarm

License

Affero GPL

Recipe

/swarm/meta.yaml

Links

biotools: swarm, doi: 10.7717/peerj.593

package swarm

Versions

3.1.0-1,  3.1.0-0,  3.0.0-0,  2.2.2-2,  2.2.2-1,  2.2.2-0,  2.1.13-0,  2.1.10-0,  2.1.5-0, 

3.1.0-1,  3.1.0-0,  3.0.0-0,  2.2.2-2,  2.2.2-1,  2.2.2-0,  2.1.13-0,  2.1.10-0,  2.1.5-0,  1.2.19-1,  1.2.19-0

Depends

• libgcc-ng >=9.3.0

• libstdcxx-ng >=9.3.0

• python >=3

• python-igraph

Required By

• lotus2

• thapbi-pict

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install swarm

and update with:

conda update swarm

or use the docker container:

docker pull quay.io/biocontainers/swarm:<tag>

(see swarm/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/swarm/README.html)