swipe

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Tool for performing rapid local alignment searches in amino acid or nucleotide sequence databases. It is a highly optimized implementation of the Smith-Waterman algoritm using SIMD parallel computing technology available on common CPUs.

Home http://dna.uio.no/swipe
Versions 2.1.0, 2.0.12
License AGPL-3.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/swipe
Development https://github.com/torognes/swipe
Links biotools: swipe, doi: 10.1186/1471-2105-12-221

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install swipe

and update with:

conda update swipe

docker

A Docker container is available at https://quay.io/repository/biocontainers/swipe.