recipe tepid

TEPID uses paired-end illumina sequencing reads to identify novel TE variants.

Homepage:

https://github.com/ListerLab/TEPID

License:

GPL-3.0-only

Recipe:

/tepid/meta.yaml

package tepid

Versions:

0.10-0,  0.8-3,  0.8-2,  0.8-1,  0.8-0,  0.7-0

Depends:

• bedtools >=2.25.0

• bowtie2

• nose

• numpy >=1.9.2

• pandas

• pybedtools

• pysam <0.9,>0.8

• python <3

• samblaster

• samtools >=1.4

• yaha

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install tepid

and update with:

conda update tepid

or use the docker container:

docker pull quay.io/biocontainers/tepid:<tag>

(see tepid/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tepid/README.html)