recipe titanomics

A comprehensive multi-omics data analysis pipeline.

Homepage:

https://github.com/raw-lab/titan

License:

BSD / BSD

Recipe:

/titanomics/meta.yaml

package titanomics

versions:

0.1-0

depends bowtie2:

depends configargparse:

depends fastp:

depends fastqc:

depends flash2:

depends flye:

depends grpcio:

<=1.43

depends megahit:

depends metaomestats:

depends psutil:

depends python:

depends ray-core:

depends ray-dashboard:

depends samtools:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install titanomics

and update with::

   mamba update titanomics

To create a new environment, run:

mamba create --name myenvname titanomics

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/titanomics:<tag>

(see `titanomics/tags`_ for valid values for ``<tag>``)

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Link to this page

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