recipe tpmcalculator

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files.

Homepage:

https://github.com/ncbi/TPMCalculator

License:

Public Domain

Recipe:

/tpmcalculator/meta.yaml

package tpmcalculator

versions:

0.0.5-1,  0.0.5-0,  0.0.4-4,  0.0.4-3,  0.0.4-2,  0.0.4-1,  0.0.4-0,  0.0.3-1,  0.0.3-0

depends bamtools:

>=2.5.2,<2.6.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install tpmcalculator

and update with::

   mamba update tpmcalculator

To create a new environment, run:

mamba create --name myenvname tpmcalculator

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/tpmcalculator:<tag>

(see `tpmcalculator/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tpmcalculator/README.html)