tpp

downloads

The Trans-Proteomic Pipeline (TPP) is a collection of integrated tools for MS/MS proteomics developed at the Seattle Proteome Center. The Bioconda package includes the command-line versions of the TPP toolset. These programs include tools for validation (PeptideProphet, iProphet, ProteinProphet, Mayu) and quantification (XPRESS, ASAPRatio, Libra) as well as a number of parsers and converters (Out2XML, Mascot2XML, Tandem2XML, etc).

Home http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP
Versions 5.0.0
License GPL v. 2.0 and LGPL
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/tpp

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install tpp

and update with:

conda update tpp

docker

A Docker container is available at https://quay.io/repository/biocontainers/tpp.