recipe transdecoder

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

Homepage

https://transdecoder.github.io/

Developer docs

https://github.com/TransDecoder/TransDecoder

License

Broad Institute

Recipe

/transdecoder/meta.yaml

package transdecoder

(downloads) docker_transdecoder

Versions
5.5.0-25.5.0-15.5.0-05.3.0-05.2.0-05.1.0-05.0.2-03.0.1-23.0.1-1

5.5.0-25.5.0-15.5.0-05.3.0-05.2.0-05.1.0-05.0.2-03.0.1-23.0.1-13.0.1-02.1.0-52.1.0-42.1.0-32.1.0-22.1.0-12.1.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install transdecoder

and update with:

conda update transdecoder

or use the docker container:

docker pull quay.io/biocontainers/transdecoder:<tag>

(see transdecoder/tags for valid values for <tag>)