recipe transdecoder

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

Homepage

https://transdecoder.github.io/

Developer docs

https://github.com/TransDecoder/TransDecoder

License

Broad Institute

Recipe

/transdecoder/meta.yaml

package transdecoder

(downloads) docker_transdecoder

Versions

5.5.0-1, 5.5.0-0, 5.3.0-0, 5.2.0-0, 5.1.0-0, 5.0.2-0, 3.0.1-2, 3.0.1-1, 3.0.1-0, 2.1.0-4, 2.1.0-3, 2.1.0-2, 2.1.0-1, 2.1.0-0

Depends perl

>=5.26.2,<5.26.3.0a0

Depends perl-db-file

Depends perl-uri

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install transdecoder

and update with:

conda update transdecoder

or use the docker container:

docker pull quay.io/biocontainers/transdecoder:<tag>

(see transdecoder/tags for valid values for <tag>)