recipe transposcope

A package for visualizing read coverage in areas flanking mobile element insertions.

Homepage

https://github.com/FenyoLab/transposcope

License

MIT / MIT License

Recipe

/transposcope/meta.yaml

package transposcope

(downloads) docker_transposcope

Versions

0.1.2-0, 0.1.0-0

Depends biopython

>=1.72

Depends bowtie2

>=2.3.4.3

Depends cherrypy

>=18.1.0

Depends numpy

>=1.15.2

Depends pandas

>=0.23.4

Depends pysam

>=0.15.0

Depends python

>=3

Depends samtools

>=1.9

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install transposcope

and update with:

conda update transposcope

or use the docker container:

docker pull quay.io/biocontainers/transposcope:<tag>

(see transposcope/tags for valid values for <tag>)