recipe treekin

Compute folding dynamics on coarse grained version of an energy landscape by numeric integration of a Markov process

Homepage:

https://www.tbi.univie.ac.at/RNA/Treekin/

License:

GPL

Recipe:

/treekin/meta.yaml

package treekin

versions:

0.5.1-4,  0.5.1-3,  0.5.1-2,  0.5.1-1,  0.5.1-0,  0.4.2-2,  0.4.2-1,  0.4.2-0,  0.3.1-3, 

0.5.1-4,  0.5.1-3,  0.5.1-2,  0.5.1-1,  0.5.1-0,  0.4.2-2,  0.4.2-1,  0.4.2-0,  0.3.1-3,  0.3.1-2,  0.3.1-1

depends lapack:

<3.9

depends libgcc-ng:

>=12

depends libgfortran-ng:

depends libgfortran5:

>=12.2.0

depends libstdcxx-ng:

>=12

depends mlapack:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install treekin

and update with::

   mamba update treekin

To create a new environment, run:

mamba create --name myenvname treekin

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/treekin:<tag>

(see `treekin/tags`_ for valid values for ``<tag>``)

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