recipe treemix

TreeMix is a method for inferring the patterns of population splits and mixtures in the history of a set of populations.

Homepage

http://pritchardlab.stanford.edu/software.html

License

GPL / GPLv3

Recipe

/treemix/meta.yaml

Links

biotools: TreeMix, doi: 10.1371/journal.pgen.1002967

package treemix

(downloads) docker_treemix

Versions

1.13-1, 1.13-0, 1.12-3, 1.12-2, 1.12-1, 1.12-0

Depends boost

>=1.66.0,<1.66.1.0a0

Depends gsl

>=2.2.1,<2.3.0a0

Depends libgcc-ng

>=4.9

Depends openblas

>=0.2.20,<0.2.21.0a0

Depends r-rcolorbrewer

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install treemix

and update with:

conda update treemix

or use the docker container:

docker pull quay.io/biocontainers/treemix:<tag>

(see treemix/tags for valid values for <tag>)