recipe trim-galore

Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control

Homepage:

https://github.com/FelixKrueger/TrimGalore

License:

GPL / GPL

Recipe:

/trim-galore/meta.yaml

Links:

usegalaxy-eu: trim_galore

package trim-galore

(downloads) docker_trim-galore

versions:
0.6.10-0,  0.6.9-0,  0.6.7-0,  0.6.6-1,  0.6.6-0,  0.6.5-0,  0.6.4-1,  0.6.4-0,  0.6.3-0, 

0.6.10-0,  0.6.9-0,  0.6.7-0,  0.6.6-1,  0.6.6-0,  0.6.5-0,  0.6.4-1,  0.6.4-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.5.0-0,  0.4.5-2,  0.4.5-1,  0.4.5-0,  0.4.4-0,  0.4.3-1,  0.4.3-0,  0.4.1-3,  0.4.1-2,  0.4.1-1,  0.4.1-0

depends cutadapt:

depends fastqc:

depends perl:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install trim-galore

and update with::

   mamba update trim-galore

To create a new environment, run:

mamba create --name myenvname trim-galore

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/trim-galore:<tag>

(see `trim-galore/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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