recipe trim-galore

Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control

Homepage

http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/

Developer docs

https://github.com/FelixKrueger/TrimGalore

License

GPL / GPL

Recipe

/trim-galore/meta.yaml

package trim-galore

(downloads) docker_trim-galore

Versions

0.6.2-0, 0.6.1-0, 0.5.0-0, 0.4.5-2, 0.4.5-1, 0.4.5-0, 0.4.4-0, 0.4.3-1, 0.4.3-0, 0.4.1-1, 0.4.1-0

Depends cutadapt

Depends fastqc

Depends perl

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install trim-galore

and update with:

conda update trim-galore

or use the docker container:

docker pull quay.io/biocontainers/trim-galore:<tag>

(see trim-galore/tags for valid values for <tag>)