- recipe trim-galore
Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control
- package trim-galore¶
- depends cutadapt:
- depends fastqc:
- depends perl:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install trim-galore and update with:: mamba update trim-galore
To create a new environment, run:
mamba create --name myenvname trim-galore
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/trim-galore:<tag> (see `trim-galore/tags`_ for valid values for ``<tag>``)