recipe trimmomatic

A flexible read trimming tool for Illumina NGS data

Homepage:

http://www.usadellab.org/cms/?page=trimmomatic

License:

GPLv3

Recipe:

/trimmomatic/meta.yaml

Links:

biotools: trimmomatic, usegalaxy-eu: trimmomatic, doi: 10.1093/bioinformatics/btu170

package trimmomatic

Versions:

0.39-2,  0.39-1,  0.39-0,  0.38-1,  0.36-6,  0.36-5,  0.36-4,  0.36-3,  0.36-1, 

0.39-2,  0.39-1,  0.39-0,  0.38-1,  0.36-6,  0.36-5,  0.36-4,  0.36-3,  0.36-1,  0.35-7,  0.35-6,  0.35-4,  0.35-3,  0.35-2,  0.35-1,  0.33-3,  0.33-2,  0.33-1,  0.33-0,  0.32-4,  0.32-3,  0.32-2,  0.32-1,  0.32-0

Depends:

• openjdk

• python

Required By:

• crispresso2

• funannotate

• haphpipe

• mintie

• kneaddata

• brockman-pipeline

• secapr

• crispresso

• kodoja

• trinity

• pathogen-profiler

• transcriptm

• shovill-se

• panpasco

• illumiprocessor

• qcumber

• shovill

• hybpiper

• nullarbor

• mutmap

• nasp

• trnanalysis

• shiver

• mercat

• jaffa

• plasmidid

• datma

• qtlseq

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install trimmomatic

and update with:

conda update trimmomatic

or use the docker container:

docker pull quay.io/biocontainers/trimmomatic:<tag>

(see trimmomatic/tags for valid values for <tag>)

Download stats

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