- recipe trinity
Trinity assembles transcript sequences from Illumina RNA-Seq data.
- Homepage:
- Documentation:
- License:
BSD / BSD-3-Clause
- Recipe:
- Links:
biotools: trinity, doi: 10.1038/nbt.1883, usegalaxy-eu: trinity
- package trinity¶
-
- Versions:
2.15.1-2
,2.15.1-1
,2.15.1-0
,2.13.2-4
,2.13.2-3
,2.13.2-2
,2.13.2-1
,2.13.2-0
,2.12.0-3
,2.15.1-2
,2.15.1-1
,2.15.1-0
,2.13.2-4
,2.13.2-3
,2.13.2-2
,2.13.2-1
,2.13.2-0
,2.12.0-3
,2.12.0-2
,2.12.0-1
,2.12.0-0
,2.11.0-1
,2.11.0-0
,2.9.1-1
,2.9.1-0
,2.8.5-5
,2.8.5-4
,2.8.5-3
,2.8.5-2
,2.8.5-1
,2.8.5-0
,2.8.4-1
,2.8.4-0
,2.8.3-0
,2.8.2-2
,2.8.2-1
,2.8.2-0
,2.6.6-2
,2.6.6-1
,2.6.6-0
,2.5.1-1
,2.5.1-0
,2.4.0-5
,2.4.0-4
,2.4.0-3
,2.3.2-2
,2.3.2-1
,2.3.2-0
,2.2.0-7
,2.2.0-6
,2.2.0-5
,2.2.0-4
,2.2.0-3
,2.2.0-2
,2.2.0-1
,2.2.0-0
,2.1.1-6
,date.2011_11_26-8
,date.2011_11_26-7
,date.2011_11_26-6
,date.2011_11_26-5
,date.2011_11_26-4
,date.2011_11_26-3
- Depends:
_openmp_mutex
>=4.5
bowtie2
>=2.3.0
htslib
>=1.17,<1.18.0a0
kmer-jellyfish
>=2.2
libgcc-ng
>=12
libstdcxx-ng
>=12
libzlib
>=1.2.13,<1.3.0a0
openjdk
>=8
python
>=3.6
r-base
>=4.1
salmon
>=1.0
samtools
>=1.9
trimmomatic
>=0.36
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install trinity
and update with:
conda update trinity
or use the docker container:
docker pull quay.io/biocontainers/trinity:<tag>
(see trinity/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/trinity/README.html)