recipe trnascan-se

tRNA detection in large-scale genome sequence

Homepage:

http://lowelab.ucsc.edu/tRNAscan-SE/

License:

GPLv3

Recipe:

/trnascan-se/meta.yaml

package trnascan-se

Versions:

2.0.11-1,  2.0.11-0,  2.0.9-3,  2.0.9-2,  2.0.9-1,  2.0.9-0,  2.0.7-1,  2.0.7-0,  2.0.6-0, 

2.0.11-1,  2.0.11-0,  2.0.9-3,  2.0.9-2,  2.0.9-1,  2.0.9-0,  2.0.7-1,  2.0.7-0,  2.0.6-0,  2.0.5-0,  2.0.3-0,  2.0-1,  2.0-0,  1.3.1-10,  1.3.1-9,  1.3.1-8,  1.3.1-7,  1.3.1-6,  1.3.1-5,  1.3.1-4,  1.3.1-3,  1.3.1-2,  1.3.1-1

Depends:

• infernal >=1.1.4

• libgcc-ng >=12

• perl >=5.32.1,<5.33.0a0 *_perl5

Required By:

• bakta

• trnanalysis

• dram

• mitofinder

• phanotate

• plannotate

• pharokka

• funannotate

• beav

• anvio

• maker

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install trnascan-se

and update with:

conda update trnascan-se

or use the docker container:

docker pull quay.io/biocontainers/trnascan-se:<tag>

(see trnascan-se/tags for valid values for <tag>)

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