recipe trycycler

Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes

Homepage:

https://github.com/rrwick/Trycycler

License:

GPLv3

Recipe:

/trycycler/meta.yaml

package trycycler

versions:

0.5.5-0,  0.5.4-0,  0.5.3-0,  0.5.1-0,  0.5.0-0,  0.4.2-0,  0.4.1-0,  0.3.1-0

depends mash:

depends miniasm:

depends minimap2:

depends muscle:

<4

depends numpy:

depends pillow:

depends python:

>=3.6,<3.11

depends python-edlib:

depends r-ape:

depends r-base:

depends r-phangorn:

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install trycycler

and update with::

   mamba update trycycler

To create a new environment, run:

mamba create --name myenvname trycycler

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/trycycler:<tag>

(see `trycycler/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/trycycler/README.html)