ucsc-bedclip

downloads

Remove lines from bed file that refer to off-chromosome places.

Home http://hgdownload.cse.ucsc.edu/admin/exe/
Versions 324, 332, 357
License varies; see http://genome.ucsc.edu/license
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ucsc-bedclip

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-bedclip

and update with:

conda update ucsc-bedclip

docker

A Docker container is available at https://quay.io/repository/biocontainers/ucsc-bedclip.