recipe ucsc-gtftogenepred

convert a GTF file to a genePred

Homepage

http://hgdownload.cse.ucsc.edu/admin/exe/

License

varies; see http://genome.ucsc.edu/license

Recipe

/ucsc-gtftogenepred/meta.yaml

package ucsc-gtftogenepred

Versions

377-3,  377-2,  377-1,  366-1,  366-0,  357-1,  357-0,  332-0,  324-0

Depends

• libgcc-ng >=7.5.0

• libpng >=1.6.37,<1.7.0a0

• libuuid >=2.32.1,<3.0a0

• mysql-connector-c >=6.1.11,<6.1.12.0a0

• openssl >=1.1.1g,<1.1.2a

• zlib >=1.2.11,<1.3.0a0

Required By

• comparative-annotation-toolkit

• genomepy

• makehub

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-gtftogenepred

and update with:

conda update ucsc-gtftogenepred

or use the docker container:

docker pull quay.io/biocontainers/ucsc-gtftogenepred:<tag>

(see ucsc-gtftogenepred/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ucsc-gtftogenepred/README.html)