recipe ucsc-gtftogenepred

convert a GTF file to a genePred

Homepage

http://hgdownload.cse.ucsc.edu/admin/exe/

License

varies; see http://genome.ucsc.edu/license

Recipe

/ucsc-gtftogenepred/meta.yaml

package ucsc-gtftogenepred

Versions

377-2, 377-1, 366-1, 366-0, 357-1, 357-0, 332-0, 324-0

Depends

• libgcc-ng >=7.3.0

• libpng >=1.6.35,<1.7.0a0

• libuuid >=2.32.1,<3.0a0

• mysql-connector-c >=6.1.11,<6.1.12.0a0

• openssl >=1.1.1a,<1.1.2a

• zlib >=1.2.11,<1.3.0a0

Required By

• makehub

• genomepy

• comparative-annotation-toolkit

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-gtftogenepred

and update with:

conda update ucsc-gtftogenepred

or use the docker container:

docker pull quay.io/biocontainers/ucsc-gtftogenepred:<tag>

(see ucsc-gtftogenepred/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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