recipe ucsc-gtftogenepred

Convert a GTF file to a genePred



varies; see



package ucsc-gtftogenepred

(downloads) docker_ucsc-gtftogenepred



depends libgcc-ng:


depends libpng:

depends libstdcxx-ng:


depends libuuid:

depends libzlib:


depends mysql-connector-c:


depends openssl:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ucsc-gtftogenepred

and update with::

   mamba update ucsc-gtftogenepred

To create a new environment, run:

mamba create --name myenvname ucsc-gtftogenepred

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `ucsc-gtftogenepred/tags`_ for valid values for ``<tag>``)

Download stats