ucsc-overlapselect

downloads

Select records based on overlapping chromosome ranges. The ranges are specified in the selectFile, with each block specifying a range. Records are copied from the inFile to outFile based on the selection criteria. Selection is based on blocks or exons rather than entire range.
Home http://hgdownload.cse.ucsc.edu/admin/exe/
Versions 366, 357
License varies; see http://genome.ucsc.edu/license
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ucsc-overlapselect

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ucsc-overlapselect

and update with:

conda update ucsc-overlapselect

docker

A Docker container is available at https://quay.io/repository/biocontainers/ucsc-overlapselect.