recipe ufcg

UFCG pipeline provides methods for a genome-wide taxonomic profiling and annotation of your own biological sequences of Fungi.

Homepage:

https://ufcg.steineggerlab.com

Developer docs:

https://github.com/steineggerlab/ufcg

License:

GPL3 / GNU General Public v3 (GPLv3)

Recipe:

/ufcg/meta.yaml

Links:

doi: 10.1093/nar/gkac894

package ufcg

(downloads) docker_ufcg

versions:

1.0.6-0,  1.0.5-0,  1.0.4-0,  1.0.3c-0

depends augustus:

>=3.5.0

depends iqtree:

depends mafft:

depends mmseqs2:

>=14.7e284

depends openjdk:

>=8

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ufcg

and update with::

   mamba update ufcg

To create a new environment, run:

mamba create --name myenvname ufcg

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ufcg:<tag>

(see `ufcg/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ufcg/README.html)