recipe unicycler

Hybrid assembly pipeline for bacterial genomes

Homepage:

https://github.com/rrwick/Unicycler

License:

GPL / GPL-3.0

Recipe:

/unicycler/meta.yaml

Links:

biotools: unicycler, usegalaxy-eu: unicycler

package unicycler

Versions:

0.5.0-3,  0.5.0-2,  0.5.0-1,  0.5.0-0,  0.4.8-5,  0.4.8-4,  0.4.8-3,  0.4.8-2,  0.4.8-1, 

0.5.0-3,  0.5.0-2,  0.5.0-1,  0.5.0-0,  0.4.8-5,  0.4.8-4,  0.4.8-3,  0.4.8-2,  0.4.8-1,  0.4.8-0,  0.4.7-1,  0.4.7-0,  0.4.6-0,  0.4.4-6,  0.4.4-5,  0.4.4-4,  0.4.4-3,  0.4.4-2,  0.4.4-1,  0.4.4-0,  0.4.1-0,  0.3.0b-1,  0.3.0b-0,  0.2.0-0

Depends:

• blast

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• miniasm

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• racon

• spades >=3.15.4

Required By:

• milonga

• bactopia-assembler

• plassembler

• bttoxin_digger

• pgcgap

• zga

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install unicycler

and update with:

conda update unicycler

or use the docker container:

docker pull quay.io/biocontainers/unicycler:<tag>

(see unicycler/tags for valid values for <tag>)

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