recipe unicycler

Hybrid assembly pipeline for bacterial genomes

Homepage

https://github.com/rrwick/Unicycler

License

GPL / GPL-3.0

Recipe

/unicycler/meta.yaml

package unicycler

(downloads) docker_unicycler

Versions

0.4.7-1, 0.4.7-0, 0.4.6-0, 0.4.4-1, 0.4.4-0, 0.4.1-0, 0.3.0b-1, 0.3.0b-0, 0.2.0-0

Depends blast

Depends bowtie2

Depends freebayes

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends miniasm

Depends openjdk

Depends pilon

Depends python

>=3.7,<3.8.0a0

Depends racon

Depends samtools

>=1.0

Depends spades

>=3.6.2

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install unicycler

and update with:

conda update unicycler

or use the docker container:

docker pull quay.io/biocontainers/unicycler:<tag>

(see unicycler/tags for valid values for <tag>)