recipe unicycler

Hybrid assembly pipeline for bacterial genomes

Homepage

https://github.com/rrwick/Unicycler

License

GPL / GPL-3.0

Recipe

/unicycler/meta.yaml

Links

biotools: unicycler, usegalaxy-eu: unicycler

package unicycler

Versions

0.4.8-4,  0.4.8-3,  0.4.8-2,  0.4.8-1,  0.4.8-0,  0.4.7-1,  0.4.7-0,  0.4.6-0,  0.4.4-4, 

0.4.8-4,  0.4.8-3,  0.4.8-2,  0.4.8-1,  0.4.8-0,  0.4.7-1,  0.4.7-0,  0.4.6-0,  0.4.4-4,  0.4.4-3,  0.4.4-2,  0.4.4-1,  0.4.4-0,  0.4.1-0,  0.3.0b-1,  0.3.0b-0,  0.2.0-0

Depends

• blast

• bowtie2

• freebayes

• libcxx >=11.1.0

• miniasm

• openjdk

• pilon

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• racon

• samtools >=1.0

• spades >=3.6.2

• zlib >=1.2.11,<1.3.0a0

Required By

• zga

• pgcgap

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install unicycler

and update with:

conda update unicycler

or use the docker container:

docker pull quay.io/biocontainers/unicycler:<tag>

(see unicycler/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/unicycler/README.html)