recipe unicycler

Hybrid assembly pipeline for bacterial genomes.

Homepage:

https://github.com/rrwick/Unicycler

Documentation:

https://github.com/rrwick/Unicycler/wiki

License:

GPL3 / GPL-3.0-or-later

Recipe:

/unicycler/meta.yaml

Links:

biotools: unicycler, usegalaxy-eu: unicycler, doi: 10.1371/journal.pcbi.1005595

package unicycler

versions:

0.5.1-3,  0.5.1-2,  0.5.1-1,  0.5.1-0,  0.5.0-5,  0.5.0-4,  0.5.0-3,  0.5.0-2,  0.5.0-1, 

0.5.1-3,  0.5.1-2,  0.5.1-1,  0.5.1-0,  0.5.0-5,  0.5.0-4,  0.5.0-3,  0.5.0-2,  0.5.0-1,  0.5.0-0,  0.4.8-5,  0.4.8-4,  0.4.8-3,  0.4.8-2,  0.4.8-1,  0.4.8-0,  0.4.7-1,  0.4.7-0,  0.4.6-0,  0.4.4-8,  0.4.4-7,  0.4.4-6,  0.4.4-5,  0.4.4-4,  0.4.4-3,  0.4.4-2,  0.4.4-1,  0.4.4-0,  0.4.1-0,  0.3.0b-1,  0.3.0b-0,  0.2.0-0

depends blast:

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends miniasm:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends racon:

depends spades:

>=3.15.4

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install unicycler

and update with::

   mamba update unicycler

To create a new environment, run:

mamba create --name myenvname unicycler

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/unicycler:<tag>

(see `unicycler/tags`_ for valid values for ``<tag>``)

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