recipe unitig-caller

Determines presence/absence of sequence elements in bacterial sequence data.

Homepage:

https://github.com/bacpop/unitig-caller

License:

APACHE / Apache-2.0

Recipe:

/unitig-caller/meta.yaml

package unitig-caller

versions:

1.3.0-4,  1.3.0-3,  1.3.0-2,  1.3.0-1,  1.3.0-0,  1.2.1-1,  1.2.1-0,  1.2.0-2,  1.2.0-1, 

1.3.0-4,  1.3.0-3,  1.3.0-2,  1.3.0-1,  1.3.0-0,  1.2.1-1,  1.2.1-0,  1.2.0-2,  1.2.0-1,  1.2.0-0,  1.1.0-1,  1.1.0-0,  1.0.1-0,  1.0.0-0,  0.2.0-0

depends _openmp_mutex:

>=4.5

depends bifrost:

>=1.3.0

depends bifrost:

>=1.3.5,<1.4.0a0

depends bzip2:

>=1.0.8,<2.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install unitig-caller

and update with::

   mamba update unitig-caller

To create a new environment, run:

mamba create --name myenvname unitig-caller

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/unitig-caller:<tag>

(see `unitig-caller/tags`_ for valid values for ``<tag>``)

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Link to this page

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