uropa

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UROPA (Universal RObust Peak Annotator) is a command line based tool, intended for genomic region annotation from e.g. peak calling. It detects the most appropriate annotation by taking parameters such as feature type, anchor, direction and strand into account. Furthermore, it allows filtering for GTF attribute values, e.g. protein_coding.

Home https://github.molgen.mpg.de/loosolab/UROPA
Versions 1.2.1, 2.0.0a0
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/uropa

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install uropa

and update with:

conda update uropa

docker

A Docker container is available at https://quay.io/repository/biocontainers/uropa.