recipe usher

Ultrafast Sample Placement on Existing Trees (UShER)

Homepage:

https://github.com/yatisht/usher

License:

MIT / MIT

Recipe:

/usher/meta.yaml

package usher

Versions:

0.6.2-1,  0.6.2-0,  0.6.1-1,  0.6.1-0,  0.6.0-0,  0.5.6-2,  0.5.6-1,  0.5.6-0,  0.5.5-0, 

0.6.2-1,  0.6.2-0,  0.6.1-1,  0.6.1-0,  0.6.0-0,  0.5.6-2,  0.5.6-1,  0.5.6-0,  0.5.5-0,  0.5.4-1,  0.5.4-0,  0.5.3-0,  0.5.2-2,  0.5.2-1,  0.5.2-0,  0.5.1-0,  0.5.0-1,  0.5.0-0,  0.4.8-4,  0.4.8-0,  0.4.7-0,  0.4.6-0,  0.4.4-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-1,  0.4.0-0,  0.3.5-0,  0.3.4-0,  0.3.2-0,  0.3.1-1,  0.3.1-0,  0.2.1-0,  0.2.0-1,  0.2.0-0,  0.1.3-0

Depends:

• boost-cpp >=1.78.0,<1.78.1.0a0

• isa-l

• libgcc-ng >=12

• libprotobuf >=3.21.12,<3.22.0a0

• libstdcxx-ng >=12

• mafft

• openmpi 4.1.2.*

• openmpi >=4.1.2,<5.0a0

• openssh

• ucsc-fatovcf

Required By:

• pangolin

• freyja

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install usher

and update with:

conda update usher

or use the docker container:

docker pull quay.io/biocontainers/usher:<tag>

(see usher/tags for valid values for <tag>)

Download stats

Link to this page

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