recipe varscan

variant detection in massively parallel sequencing data

Homepage

http://dkoboldt.github.io/varscan/

License

The Non-Profit Open Software License version 3.0 (NPOSL-3.0)

Recipe

/varscan/meta.yaml

Links

biotools: varscan

package varscan

(downloads) docker_varscan

Versions

2.4.3-2, 2.4.3-1, 2.4.3-0, 2.4.2-2, 2.4.2-1, 2.4.2-0, 2.4.1-0, 2.4.0-1, 2.4.0-0, 2.3.7-2, 2.3.7-0

Depends openjdk

Depends zlib

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install varscan

and update with:

conda update varscan

or use the docker container:

docker pull quay.io/biocontainers/varscan:<tag>

(see varscan/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/varscan/README.html)