recipe varscan

variant detection in massively parallel sequencing data

Homepage:

http://dkoboldt.github.io/varscan/

License:

The Non-Profit Open Software License version 3.0 (NPOSL-3.0)

Recipe:

/varscan/meta.yaml

Links:

biotools: varscan

package varscan

Versions:

2.4.4-1,  2.4.4-0,  2.4.3-2,  2.4.3-1,  2.4.3-0,  2.4.2-2,  2.4.2-1,  2.4.2-0,  2.4.1-0, 

2.4.4-1,  2.4.4-0,  2.4.3-2,  2.4.3-1,  2.4.3-0,  2.4.2-2,  2.4.2-1,  2.4.2-0,  2.4.1-0,  2.4.0-1,  2.4.0-0,  2.3.7-4,  2.3.7-3,  2.3.7-2,  2.3.7-0

Depends:

• openjdk

• zlib

Required By:

• slamdunk

• somaticseq

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install varscan

and update with:

conda update varscan

or use the docker container:

docker pull quay.io/biocontainers/varscan:<tag>

(see varscan/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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