recipe varscan

variant detection in massively parallel sequencing data

Homepage

http://dkoboldt.github.io/varscan/

License

The Non-Profit Open Software License version 3.0 (NPOSL-3.0)

Recipe

/varscan/meta.yaml

Links

biotools: varscan

package varscan

Versions

2.4.4-0,  2.4.3-2,  2.4.3-1,  2.4.3-0,  2.4.2-2,  2.4.2-1,  2.4.2-0,  2.4.1-0,  2.4.0-1, 

2.4.4-0,  2.4.3-2,  2.4.3-1,  2.4.3-0,  2.4.2-2,  2.4.2-1,  2.4.2-0,  2.4.1-0,  2.4.0-1,  2.4.0-0,  2.3.7-3,  2.3.7-2,  2.3.7-0

Depends

• openjdk

• zlib

Required By

• slamdunk

• somaticseq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install varscan

and update with:

conda update varscan

or use the docker container:

docker pull quay.io/biocontainers/varscan:<tag>

(see varscan/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/varscan/README.html)