vcf2maf

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Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms

Home https://github.com/mskcc/vcf2maf
Versions 1.6.12, 1.6.14, 1.6.8
License Apache-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/vcf2maf

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install vcf2maf

and update with:

conda update vcf2maf

Notes

This package installs only vcf2maf and does not integrate with the variant-effect-predictor (VEP). To do so, please follow the instructions at https://github.com/mskcc/vcf2maf/blob/master/README.md.

docker

A Docker container is available at https://quay.io/repository/biocontainers/vcf2maf.