recipe vcfkit

VCF-kit is a command-line based collection of utilities for performing analysis on Variant Call Format (VCF) files.

Homepage:

https://github.com/AndersenLab/VCF-kit

License:

MIT / MIT

Recipe:

/vcfkit/meta.yaml

package vcfkit

Versions:

0.2.9-0,  0.2.8-0,  0.1.6-4,  0.1.6-3,  0.1.6-2,  0.1.6-0,  0.0.4-0

Depends:

• awesome-slugify

• bcftools >=1.3

• biopython

• blast >=2.2.31

• bwa >=0.7.12

• clint

• cyvcf2 >=0.6.5

• docopt

• intervaltree 2.1.0

• jinja2

• matplotlib-base

• muscle >=3.8.31

• networkx 1.11

• numpy

• python

• requests

• samtools >=1.3

• scipy

• tabulate

• yahmm >=1.1.2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install vcfkit

and update with:

conda update vcfkit

or use the docker container:

docker pull quay.io/biocontainers/vcfkit:<tag>

(see vcfkit/tags for valid values for <tag>)

Download stats

Link to this page

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