recipe velvet-sc

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

Homepage

http://bix.ucsd.edu/projects/singlecell/

License

GPL / GPL-2.0

Recipe

/velvet-sc/meta.yaml

package velvet-sc

(downloads) docker_velvet-sc

Versions

0.7.62-2, 0.7.62-1, 0.7.62-0

Depends libgcc-ng

>=4.9

Depends perl

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install velvet-sc

and update with:

conda update velvet-sc

or use the docker container:

docker pull quay.io/biocontainers/velvet-sc:<tag>

(see velvet-sc/tags for valid values for <tag>)