recipe virsorter

VirSorter2 -- A multi-classifier, expert-guided approach to detect diverse DNA and RNA virus genomes

Homepage:

https://github.com/jiarong/VirSorter2

Developer docs:

https://github.com/jiarong/VirSorter2/virsorter

License:

GPL / GPL-2.0

Recipe:

/virsorter/meta.yaml

package virsorter

(downloads) docker_virsorter

versions:
2.2.4-2,  2.2.4-1,  2.2.4-0,  2.2.3-1,  2.2.3-0,  2.2.2-0,  2.2.1-0,  2.2-0,  2.1-0, 

2.2.4-2,  2.2.4-1,  2.2.4-0,  2.2.3-1,  2.2.3-0,  2.2.2-0,  2.2.1-0,  2.2-0,  2.1-0,  2.0-0,  2.0.beta-1,  2.0.beta-0,  2.0.alpha-2,  2.0.alpha-1,  2.0.alpha-0,  1.0.6-1,  1.0.6-0,  1.0.5-4,  1.0.5-3,  1.0.5-2,  1.0.5-1,  1.0.5-0

depends click:

>=7

depends conda-package-handling:

<=1.9

depends cookiecutter:

depends git:

depends mamba:

<2

depends python:

>=3.6,<=3.10

depends ruamel.yaml:

0.16.*

depends snakemake-minimal:

>=5.18,<=5.26

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install virsorter

and update with::

   mamba update virsorter

To create a new environment, run:

mamba create --name myenvname virsorter

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/virsorter:<tag>

(see `virsorter/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/virsorter/README.html)