recipe visor

Haplotype-aware structural variants simulator for short, long and linked reads

Homepage:

https://github.com/davidebolo1993/VISOR.git

License:

LGPL-3.0

Recipe:

/visor/meta.yaml

package visor

versions:

1.1.2.1-0,  1.1.2-0

depends badread:

>=0.4.0

depends mappy:

>=2.17

depends minimap2:

>=2.17

depends numpy:

>=1.15.3

depends plotly:

3.10.0

depends pybedtools:

>=0.8.0

depends pyfaidx:

>=0.5.5.2

depends pysam:

>=0.15.0

depends python:

depends pywgsim:

>=0.3.3

depends samtools:

>=1.9

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install visor

and update with::

   mamba update visor

To create a new environment, run:

mamba create --name myenvname visor

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/visor:<tag>

(see `visor/tags`_ for valid values for ``<tag>``)

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Link to this page

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