recipe wgdi

Whole Genome Duplication Identification

Homepage:

https://github.com/SunPengChuan/wgdi

License:

BSD / BSD-2-Clause

Recipe:

/wgdi/meta.yaml

Python utility libraries on comparative genomics

package wgdi

Versions:

0.6.5-0,  0.6.4-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.9-0,  0.5.8-0,  0.5.7-0, 

0.6.5-0,  0.6.4-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.9-0,  0.5.8-0,  0.5.7-0,  0.5.6-0,  0.5.4-0,  0.5.3-0,  0.5.2-0,  0.5.1-1,  0.5.1-0,  0.4.9-0,  0.4.7-0,  0.4.6-0,  0.4.5-0,  0.4.4-0,  0.4.1-0

Depends:

• biopython

• divvier 1.01

• fasttree

• iqtree

• mafft

• matplotlib-base

• muscle 3.8.1551

• numpy

• pal2nal

• paml

• pandas >=1.1.0

• python >=3

• scipy

• trimal

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install wgdi

and update with:

conda update wgdi

or use the docker container:

docker pull quay.io/biocontainers/wgdi:<tag>

(see wgdi/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/wgdi/README.html)