recipe wgdi

Whole Genome Duplication Identification

Homepage:

https://github.com/SunPengChuan/wgdi

License:

BSD / BSD-2-Clause

Recipe:

/wgdi/meta.yaml

Python utility libraries on comparative genomics

package wgdi

versions:

0.6.5-0,  0.6.4-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.9-0,  0.5.8-0,  0.5.7-0, 

0.6.5-0,  0.6.4-0,  0.6.3-0,  0.6.2-0,  0.6.1-0,  0.6.0-0,  0.5.9-0,  0.5.8-0,  0.5.7-0,  0.5.6-0,  0.5.4-0,  0.5.3-0,  0.5.2-0,  0.5.1-1,  0.5.1-0,  0.4.9-0,  0.4.7-0,  0.4.6-0,  0.4.5-0,  0.4.4-0,  0.4.1-0

depends biopython:

depends divvier:

1.01

depends fasttree:

depends iqtree:

depends mafft:

depends matplotlib-base:

depends muscle:

3.8.1551

depends numpy:

depends pal2nal:

depends paml:

depends pandas:

>=1.1.0

depends python:

>=3

depends scipy:

depends trimal:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install wgdi

and update with::

   mamba update wgdi

To create a new environment, run:

mamba create --name myenvname wgdi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/wgdi:<tag>

(see `wgdi/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/wgdi/README.html)