recipe wgs-assembler

Celera Assembler (wgs-assembler) is a de novo whole-genome shotgun (WGS) DNA sequence assembler

Homepage:

http://wgs-assembler.sourceforge.net/wiki/index.php?title=Main_Page

License:

MIT

Recipe:

/wgs-assembler/meta.yaml

package wgs-assembler

versions:

8.3-0

depends atac:

depends blasr:

depends estmapper:

depends falcon:

depends jellyfish:

depends libgcc:

depends meryl:

depends pbdagcon:

depends perl:

5.22.0*

depends samtools:

depends sim4db:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install wgs-assembler

and update with::

   mamba update wgs-assembler

To create a new environment, run:

mamba create --name myenvname wgs-assembler

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/wgs-assembler:<tag>

(see `wgs-assembler/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/wgs-assembler/README.html)