recipe wgs-assembler

Celera Assembler (wgs-assembler) is a de novo whole-genome shotgun (WGS) DNA sequence assembler

Homepage:http://wgs-assembler.sourceforge.net/wiki/index.php?title=Main_Page License:MIT Recipe:/wgs-assembler/meta.yaml

package wgs-assembler

Versions:

8.3-0

Depends:

• atac
• blasr
• estmapper
• falcon
• jellyfish
• libgcc
• meryl
• pbdagcon
• perl 5.22.0*
• samtools
• sim4db

Required By:

• sprai
• intemap

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install wgs-assembler

and update with:

conda update wgs-assembler

or use the docker container:

docker pull quay.io/biocontainers/wgs-assembler:<tag>

(see wgs-assembler/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/wgs-assembler/README.html)